PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g04820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 187aa    MW: 20517.2 Da    PI: 8.744
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g04820genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-054163123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H+++H
  CA10g04820 41 YTCTFCKREFKSAQALGGHMNVH 63
                9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.85E-63867No hitNo description
Gene3DG3DSA:3.30.160.605.7E-43966IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1154168IPR007087Zinc finger, C2H2
SMARTSM003550.00354163IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-64164IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKDFTTTTTT NKNVKEYSWD NINCGDEGDL VGGFLWPPRS YTCTFCKREF KSAQALGGHM  60
NVHRRDRARL RLQSLSDTIP NPNPNPNPNP SCVSSPSSPS RKFFPPFVPT LPPLLSPTSF  120
SSSTAGVSHG MKNGDLTKMG SAKFEKNGKE CSEVVKKGEF LRLDLGIGLI SESKDDLDLE  180
LRLGYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-143663229superman protein
2l1o_A4e-143663229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-139HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568142.11e-136PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLM1BG983e-87M1BG98_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000444961e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-32C2H2 family protein